[ DevCourseWeb.com ] Udemy - Bioinformatics; Learn Docking and Mol Dynamics Simulation

Creation Time	Nov. 24, 2023, 5:24 a.m.
Last Access Time	Oct. 8, 2026, 11:47 p.m.
File Size	2.7 GB
Keywords	and Docking Mol - Udemy DevCourseWeb Learn Dynamics Simulation com Bioinformatics;
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Total Files	262
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~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/008 Practical-4 How to Predict 3D Structure Using Modeller (Homology).mp4 259.7 MB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/009 Practical-5 How to Use I-TASSER for Prediction of 3D Structure.mp4 121.9 MB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/006 Practical-3 Fixing Missing Residues Issue With Modeller.mp4 102.1 MB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/003 Practical-1 How To Download Protein Structure From Protein Databank.mp4 90.0 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/024 Practical-35 (Part-A) Performing Docking Using AutoDock4.mp4 83.0 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/028 Practical-35 PatchDock; Shape Complementary Docking Program.mp4 80.1 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/014 Practical-28 Downloading and Preparation of Protein 3D Structure for Docking.mp4 67.6 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/017 Practical-30 Drawing of Ligand Structure in ChemSketch.mp4 62.2 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/027 Practical-34 Analyzing the Docking Data.mp4 60.9 MB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/015 Practical-44 Analysis.mp4 59.7 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/018 Practical-31 Preparation of Ligand Molecule for Docking.mp4 54.5 MB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/001 What is Protein.mp4 51.3 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/020 Practical-33 Setting Grid.mp4 50.1 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/008 Practical-11 Creation of Topology File In GROMACS.mp4 49.4 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/011 Practical-14 Energy Minimization (EM) in GROMACS.mp4 48.5 MB
~Get Your Files Here !/09 - Recent Updates in Structural Biology For MD and Docking/001 Protein Databank Update.mp4 46.1 MB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/007 Practical-48 Downloading of Thousands of Ligands in One Click.mp4 43.1 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/002 Practical-8 Installation of GROMACS.mp4 42.0 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/009 Practical-12 Solvation of Step in Molecular Dynamics Simulation.mp4 41.1 MB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/009 Practical-40 Making Complex.mp4 40.9 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/026 Practical-25 Opening of XVG Files in Excel.mp4 40.6 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/019 Practical-32 Prediction of Active Site of Protein.mp4 38.2 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/027 Practical-25.1 Visualization of MD Trajectory in Pymol.mp4 36.5 MB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/004 Practical-2 Visualization of 3D Structure of Protein Using Pymol.mp4 35.6 MB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/008 Practical-39 Preparation of Ligand Topology File.mp4 35.6 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/010 Practical-13 Ionization Step in Molecular Dynamics Simulation.mp4 34.0 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/016 Practical-29 Downloading of Ligand 3D Structure from ZINC Database.mp4 33.4 MB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/007 Practical-38 Preparation of Protein Topology File.mp4 31.7 MB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/011 Practical-42 Ligand Restrain.mp4 31.5 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/001 Practical-7 Installation of Linux in Windows Environment.mp4 30.3 MB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/004 Practical-36 Very First Step; Preparation of Protein and Ligand.mp4 29.9 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/022 Practical-34 (Part-A) Performing Docking with Vina.mp4 29.7 MB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/010 Practical-6 Introduction of Alpha-Fold Database and Alpha-Fold Colab.mp4 28.9 MB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/010 Practical-51 Docking of Ligands with Receptors in Vina.mp4 27.8 MB
~Get Your Files Here !/04 - Module 3 Computer Operating System Used for Molecular Dynamics Simulation/004 Some Basic Commands for Linux Operating System.mp4 26.8 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/026 Practical-33 Preforming Docking with CB Dock.mp4 26.4 MB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/005 Practical-46 Installation of Open Babel and Auto-Dock Vina In Linux (Ubuntu).mp4 25.0 MB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/008 Practical-49 Preparation of Ligands for Docking.mp4 24.9 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/023 Practical-34 (Part-B) Visualization of Vina Docking Data.mp4 24.6 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/014 Practical-17 Equilibration Phase-II (Part-A).mp4 24.2 MB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/001 Importance of Virtual Screening.mp4 23.3 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/012 Practical-26 Installation of MGL Tools, Vina, AutoDock4 & Autogrid.mp4 23.0 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/025 Practical-24 Calculation of Solvent Accessible Surface Area (SASA).mp4 22.6 MB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/013 Practical-44 Equilibration.mp4 22.4 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/012 Practical-15 Equilibration Phase-I (Part-A).mp4 21.9 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/025 Practical-35 (Part-B) Visualization of AutoDock4 Docking Results.mp4 21.1 MB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/010 Solvation and Ionization of System.mp4 20.0 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/005 Practical-9 Creating Folder in Ubuntu For Molecular Dynamics Simulations.mp4 19.4 MB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/010 Practical-41 Solvation, Ionization & Energy Minimization of Complex.mp4 18.9 MB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/014 Practical-44 Production Phase.mp4 18.8 MB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/002 Introduction to Virtual Screening.mp4 17.0 MB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/012 Equilibration and Production Phase of Molecular Dynamics Simulation.mp4 16.7 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/007 Practical-10 Cleaning Protein Structure For Molecular Dynamics Simulations.mp4 16.6 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/005 Sampling Algorithms-Part-3.mp4 16.4 MB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/005 Fixing the Missing Residues in Protein 3D Structure Downloaded.mp4 16.0 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/021 Very Important Step; Be Careful Here.mp4 15.8 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/004 Work Flow of Molecular Dynamics in GROMACS.mp4 15.1 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/013 Practical-16 Equilibration Phase-I (Part-B).mp4 15.0 MB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/001 Basic Introduction of Molecular Dynamic Simulations and its Steps.mp4 14.9 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/015 Practical-18 Equilibration Phase-II (Part-B).mp4 14.6 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/018 Basic Theory of Molecular Dynamics Simulation Data Analysis.mp4 14.3 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/017 Practical-19 Running Molecular Dynamics Simulation Final Phase.mp4 13.5 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/016 Understanding md.mdp File Before Final Phase.mp4 12.7 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/013 Practical-27 Installation of Ligand Drawing Tools.mp4 12.7 MB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/011 Practical-52 Analysis.mp4 11.9 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/021 Practical-20 Calculation of RMSD.mp4 11.4 MB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/006 Practical-47 Preparation of Protein Receptor for Virtual Screening.mp4 11.2 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/022 Practical-21 Calculation of RMSF.mp4 10.8 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/023 Practical-22 Calculation of Radius of Gyration (Rg).mp4 9.6 MB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/008 Modeller-access-in-MAC.mp4 9.4 MB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/005 Practical-37 Necessary Files Needed For Molecular Dynamics Simulations.mp4 9.1 MB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/012 Practical-43 Thermostats.mp4 8.4 MB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/008 Protein Structure Preparation for Molecular Dynamics Simulations.mp4 8.2 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/020 Bringing the Protein in Center Before Data Analysis.mp4 8.1 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/009 Basic Steps in Docking Protocol.mp4 8.0 MB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/006 MD (Molecular Dynamics Simulation) Cycle.mp4 7.9 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/006 Sampling Algorithms-Part-4.mp4 7.9 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/019 Commands for Analysis of Molecular Dynamics Simulation Data.mp4 7.6 MB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/003 Basic Theory of Molecular Dynamics Simulation (Part-2).mp4 7.4 MB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/009 Practical-50 Setting Grid and Writing of Configuration File.mp4 7.2 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/010 Theory of Docking Steps-Part-1.mp4 7.0 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/015 Issue With Protein Structure Preparation in MGL Tools.mp4 6.9 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/024 Practical-23 Calculation of Total Number of Hydrogen bonds (Hb).mp4 6.8 MB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/003 Fundamental Steps of Virtual Screening.mp4 6.5 MB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/004 Basic Theory of Molecular Dynamics Simulation (Part-3).mp4 6.4 MB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/005 Basic Theory of Molecular Dynamics Simulation (Part-4).mp4 6.0 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/007 Scoring Algorithms.mp4 5.7 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/011 Theory of Docking Steps-Part-2.mp4 5.6 MB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/009 Preparation of Topology File for Molecular Dynamics Simulations.mp4 5.3 MB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/001 Biggest Drawback of Conventional Docking Protocol.mp4 5.1 MB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/002 Basic Theory of Molecular Dynamics Simulation (Part-1).mp4 5.0 MB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/008 pdb-95.pir 4.8 MB
~Get Your Files Here !/04 - Module 3 Computer Operating System Used for Molecular Dynamics Simulation/002 Features of Linux Operating System.mp4 4.8 MB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/002 Experimental Techniques to Determine 3D Structure of Protein.mp4 4.6 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/003 Modules of GROMACS Used in Molecular Dynamics Tutorial.mp4 4.5 MB
~Get Your Files Here !/01 - Important Massage Before Start of The Course/001 Important Massage from Instructors.mp4 4.3 MB
~Get Your Files Here !/04 - Module 3 Computer Operating System Used for Molecular Dynamics Simulation/005 What's Next.mp4 4.2 MB
~Get Your Files Here !/04 - Module 3 Computer Operating System Used for Molecular Dynamics Simulation/001 Basic Type of Operating System Available in Market.mp4 4.2 MB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/006 Commands to Run Molecular Dynamics Simulations (For You).mp4 3.6 MB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/003 Basic Steps of Protein-Ligand MD Simulations.mp4 3.3 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/001 Introduction of Docking-Part-1.mp4 3.2 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/002 Introduction of Docking-Part-2.mp4 3.0 MB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/006 Commands to Run Ligand-Protein Molecular Dynamics Simulations.mp4 3.0 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/008 Types of Docking.mp4 2.8 MB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/011 Energy Minimization (EM) of System.mp4 2.7 MB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/007 Intro to Protein 3D Structure Prediction.mp4 2.4 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/003 Sampling Algorithms-Part-1.mp4 1.9 MB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/004 Sampling Algorithms-Part-2.mp4 1.6 MB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/007 Basic Steps of Molecular Dynamics Simulations.mp4 1.6 MB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/004 Commands Needed to Run Virtual Screening.mp4 1.6 MB
~Get Your Files Here !/04 - Module 3 Computer Operating System Used for Molecular Dynamics Simulation/003 Terminal of Linux Operating System.mp4 1.5 MB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/002 Difference Between Simple MD Simulation Vs Protein-Ligand MD Simulations.mp4 1.4 MB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/008 tseq1.pdb 640.2 KB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/008 tseq2.pdb 640.2 KB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/008 tseq3.pdb 640.2 KB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/008 tseq4.pdb 640.2 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/002 Commands-to-Install-GROMACS-Using-Linux-Terminal.pdf 91.9 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/006 Commands-to-run-MD-simulation-of-Protein-in-Water.pdf 87.6 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/006 Commands-for-MD-Ligand-Protein-Complex.pdf 82.0 KB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/004 Commands-to-Run-Vina-for-Virtual-Screening-in-Linux-Environment.pdf 69.4 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/019 Commands-to-Analyze-the-MD-Data.pdf 66.9 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/015 Commands-to-Analyze-the-Molecular-Dynamics-Simulation-Data-of-Ligand-Protein-Complex.pdf 64.4 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/005 cgenff-charmm2gmx.py 37.0 KB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/008 Practical-4 How to Predict 3D Structure Using Modeller (Homology)_en.srt 35.4 KB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/006 Practical-3 Fixing Missing Residues Issue With Modeller_en.srt 22.1 KB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/003 Practical-1 How To Download Protein Structure From Protein Databank_en.srt 17.6 KB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/009 Practical-5 How to Use I-TASSER for Prediction of 3D Structure_en.srt 15.0 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/017 Practical-30 Drawing of Ligand Structure in ChemSketch_en.srt 14.9 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/014 Practical-28 Downloading and Preparation of Protein 3D Structure for Docking_en.srt 14.4 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/027 Practical-34 Analyzing the Docking Data_en.srt 13.1 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/024 Practical-35 (Part-A) Performing Docking Using AutoDock4_en.srt 12.4 KB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/008 Practical-49 Preparation of Ligands for Docking_en.srt 11.7 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/022 Practical-34 (Part-A) Performing Docking with Vina_en.srt 10.8 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/028 Practical-35 PatchDock; Shape Complementary Docking Program_en.srt 10.5 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/018 Practical-31 Preparation of Ligand Molecule for Docking_en.srt 10.5 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/016 Practical-29 Downloading of Ligand 3D Structure from ZINC Database_en.srt 9.5 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/026 Practical-33 Preforming Docking with CB Dock_en.srt 9.2 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/015 Practical-44 Analysis_en.srt 9.1 KB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/004 Practical-2 Visualization of 3D Structure of Protein Using Pymol_en.srt 9.1 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/020 Practical-33 Setting Grid_en.srt 8.8 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/009 Practical-40 Making Complex_en.srt 8.6 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/010 Practical-13 Ionization Step in Molecular Dynamics Simulation_en.srt 8.3 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/018 Basic Theory of Molecular Dynamics Simulation Data Analysis_en.srt 8.1 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/008 Practical-39 Preparation of Ligand Topology File_en.srt 7.9 KB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/001 What is Protein_en.srt 7.8 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/012 Practical-15 Equilibration Phase-I (Part-A)_en.srt 7.6 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/011 Practical-42 Ligand Restrain_en.srt 7.5 KB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/010 Practical-6 Introduction of Alpha-Fold Database and Alpha-Fold Colab_en.srt 7.5 KB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/007 Practical-48 Downloading of Thousands of Ligands in One Click_en.srt 7.3 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/026 Practical-25 Opening of XVG Files in Excel_en.srt 7.1 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/008 Practical-11 Creation of Topology File In GROMACS_en.srt 7.0 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/011 Practical-14 Energy Minimization (EM) in GROMACS_en.srt 6.9 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/025 Practical-35 (Part-B) Visualization of AutoDock4 Docking Results_en.srt 6.9 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/002 Practical-8 Installation of GROMACS_en.srt 6.7 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/009 Practical-12 Solvation of Step in Molecular Dynamics Simulation_en.srt 6.6 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/018 ligand.pdb 6.6 KB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/010 Practical-51 Docking of Ligands with Receptors in Vina_en.srt 6.4 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/012 Practical-26 Installation of MGL Tools, Vina, AutoDock4 & Autogrid_en.srt 6.4 KB
~Get Your Files Here !/09 - Recent Updates in Structural Biology For MD and Docking/001 Protein Databank Update_en.srt 6.3 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/010 Practical-41 Solvation, Ionization & Energy Minimization of Complex_en.srt 6.1 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/023 Practical-34 (Part-B) Visualization of Vina Docking Data_en.srt 6.0 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/001 Practical-7 Installation of Linux in Windows Environment_en.srt 6.0 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/007 Practical-10 Cleaning Protein Structure For Molecular Dynamics Simulations_en.srt 5.9 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/007 Practical-38 Preparation of Protein Topology File_en.srt 5.8 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/004 Work Flow of Molecular Dynamics in GROMACS_en.srt 5.6 KB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/005 Practical-46 Installation of Open Babel and Auto-Dock Vina In Linux (Ubuntu)_en.srt 5.5 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/013 Practical-44 Equilibration_en.srt 5.5 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/019 Practical-32 Prediction of Active Site of Protein_en.srt 5.4 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/017 Practical-19 Running Molecular Dynamics Simulation Final Phase_en.srt 5.2 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/013 Practical-27 Installation of Ligand Drawing Tools_en.srt 5.2 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/027 Practical-25.1 Visualization of MD Trajectory in Pymol_en.srt 5.0 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/005 Practical-9 Creating Folder in Ubuntu For Molecular Dynamics Simulations_en.srt 5.0 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/020 Bringing the Protein in Center Before Data Analysis_en.srt 4.9 KB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/003 Fundamental Steps of Virtual Screening_en.srt 4.6 KB
~Get Your Files Here !/04 - Module 3 Computer Operating System Used for Molecular Dynamics Simulation/004 Some Basic Commands for Linux Operating System_en.srt 4.6 KB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/003 Basic Theory of Molecular Dynamics Simulation (Part-2)_en.srt 4.3 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/015 Practical-18 Equilibration Phase-II (Part-B)_en.srt 4.3 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/010 Theory of Docking Steps-Part-1_en.srt 4.2 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/021 Practical-20 Calculation of RMSD_en.srt 4.2 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/006 Sampling Algorithms-Part-4_en.srt 4.0 KB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/008 Protein Structure Preparation for Molecular Dynamics Simulations_en.srt 3.9 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/004 Practical-36 Very First Step; Preparation of Protein and Ligand_en.srt 3.9 KB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/004 Basic Theory of Molecular Dynamics Simulation (Part-3)_en.srt 3.8 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/011 Theory of Docking Steps-Part-2_en.srt 3.7 KB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/009 Practical-50 Setting Grid and Writing of Configuration File_en.srt 3.7 KB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/002 Introduction to Virtual Screening_en.srt 3.7 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/024 Practical-23 Calculation of Total Number of Hydrogen bonds (Hb)_en.srt 3.7 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/007 Scoring Algorithms_en.srt 3.6 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/022 Practical-21 Calculation of RMSF_en.srt 3.5 KB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/006 Practical-47 Preparation of Protein Receptor for Virtual Screening_en.srt 3.4 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/005 sort-mol2-bonds.pl 3.4 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/003 Modules of GROMACS Used in Molecular Dynamics Tutorial_en.srt 3.4 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/025 Practical-24 Calculation of Solvent Accessible Surface Area (SASA)_en.srt 3.3 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/014 Practical-44 Production Phase_en.srt 3.3 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/005 Practical-37 Necessary Files Needed For Molecular Dynamics Simulations_en.srt 3.3 KB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/005 Fixing the Missing Residues in Protein 3D Structure Downloaded_en.srt 3.2 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/014 Practical-17 Equilibration Phase-II (Part-A)_en.srt 3.1 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/023 Practical-22 Calculation of Radius of Gyration (Rg)_en.srt 3.1 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/013 Practical-16 Equilibration Phase-I (Part-B)_en.srt 3.0 KB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/002 Basic Theory of Molecular Dynamics Simulation (Part-1)_en.srt 2.9 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/012 Practical-43 Thermostats_en.srt 2.9 KB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/009 Preparation of Topology File for Molecular Dynamics Simulations_en.srt 2.9 KB
~Get Your Files Here !/04 - Module 3 Computer Operating System Used for Molecular Dynamics Simulation/002 Features of Linux Operating System_en.srt 2.8 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/016 Understanding md.mdp File Before Final Phase_en.srt 2.8 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/021 Very Important Step; Be Careful Here_en.srt 2.7 KB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/002 Experimental Techniques to Determine 3D Structure of Protein_en.srt 2.7 KB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/006 MD (Molecular Dynamics Simulation) Cycle_en.srt 2.7 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/017 md.mdp 2.7 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/005 npt.mdp 2.7 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/005 ie.mdp 2.6 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/005 md.mdp 2.6 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/014 npt.mdp 2.6 KB
~Get Your Files Here !/04 - Module 3 Computer Operating System Used for Molecular Dynamics Simulation/001 Basic Type of Operating System Available in Market_en.srt 2.5 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/005 nvt.mdp 2.4 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/015 Issue With Protein Structure Preparation in MGL Tools_en.srt 2.4 KB
~Get Your Files Here !/04 - Module 3 Computer Operating System Used for Molecular Dynamics Simulation/005 What's Next_en.srt 2.4 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/012 nvt.mdp 2.4 KB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/005 Basic Theory of Molecular Dynamics Simulation (Part-4)_en.srt 2.3 KB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/011 Practical-52 Analysis_en.srt 2.2 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/008 Types of Docking_en.srt 2.1 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/001 Biggest Drawback of Conventional Docking Protocol_en.srt 2.0 KB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/007 Intro to Protein 3D Structure Prediction_en.srt 2.0 KB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/012 Equilibration and Production Phase of Molecular Dynamics Simulation_en.srt 1.9 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/009 Basic Steps in Docking Protocol_en.srt 1.9 KB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/001 Importance of Virtual Screening_en.srt 1.8 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/003 Basic Steps of Protein-Ligand MD Simulations_en.srt 1.8 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/002 Introduction of Docking-Part-2_en.srt 1.8 KB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/011 Energy Minimization (EM) of System_en.srt 1.8 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/001 Introduction of Docking-Part-1_en.srt 1.7 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/006 Commands to Run Molecular Dynamics Simulations (For You)_en.srt 1.6 KB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/010 Solvation and Ionization of System_en.srt 1.6 KB
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/001 Basic Introduction of Molecular Dynamic Simulations and its Steps_en.srt 1.5 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/005 Sampling Algorithms-Part-3_en.srt 1.5 KB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/006 alignment.ali 1.5 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/006 Commands to Run Ligand-Protein Molecular Dynamics Simulations_en.srt 1.4 KB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/008 script1.py 1.3 KB
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/004 Sampling Algorithms-Part-2_en.srt 1.3 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/002 Difference Between Simple MD Simulation Vs Protein-Ligand MD Simulations_en.srt 1.2 KB
~Get Your Files Here !/04 - Module 3 Computer Operating System Used for Molecular Dynamics Simulation/003 Terminal of Linux Operating System_en.srt 1.1 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/019 Commands for Analysis of Molecular Dynamics Simulation Data_en.srt 1.1 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/005 em.mdp 1.1 KB
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/008 qseq1.ali 1.1 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/010 ions.mdp 1.0 KB
~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/011 minim.mdp 1.0 KB
~Get Your Files Here !/01 - Important Massage Before Start of The Course/001 Important Massage from Instructors_en.srt 1.0 KB
~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/005 ions.mdp 1.0 KB
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/004 Commands Needed to Run Virtual Screening_en.srt 923 bytes
~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/007 Basic Steps of Molecular Dynamics Simulations_en.srt 894 bytes
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/003 Sampling Algorithms-Part-1_en.srt 881 bytes
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/006 script3.py 553 bytes
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/008 script5.py 527 bytes
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/008 script2.py 469 bytes
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/006 script2.py 464 bytes
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/008 script4.py 410 bytes
~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/010 Vina-linux.pl 409 bytes
~Get Your Files Here !/Bonus Resources.txt 386 bytes
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/008 script3.py 383 bytes
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/012 MD-3-Installation-of-Docking-Software-10-Silent.txt 366 bytes
~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/006 script1.py 240 bytes
Get Bonus Downloads Here.url 182 bytes
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/022 conf.txt 182 bytes
~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/013 MD-3-Installation-of-Ligand-Software-11-Silent.txt 170 bytes

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